Maize chip-seq

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August undefined, 2024

Web9 jun. 2024 · 作者开发了一种高效的玉米原生质体分离和转化系统（图1a），成功对104个在玉米叶片发育切片上表达的TFs进行了ChIP-seq实验。然后应用 ENCODE2统 … Web1 okt. 2024 · NGS is comprised of three basic steps: (1) genomic DNA fragment library construction; (2) DNA amplification by polymerase chain reaction (PCR); and (3) sequencing 5. Three major NGS platforms:...

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Web5 aug. 2024 · Each ChIP was performed as 2 independent experiments, and quality was assessed by quantitative polymerase chain reaction (qPCR) using primers and probes … http://cistrome.org/ strong heart strong mind

Summary of P1 ChIP-Seq Results. Download Scientific Diagram

WebActually, data generated from DAP-seq experiments are highly similar to those out of ChIP-seq methods, but are generated much faster. We also provide a standard procedure to … Web7 feb. 2024 · Using chromatin immunoprecipitation sequencing (ChIP-seq) coupled with RNA sequencing (RNA-seq) assays, we identified 259 O11-modulated target genes. O11 was found to directly regulate key TFs in endosperm development (NKD2 and ZmDOF3) and nutrient metabolism (O2 and PBF). Web23 aug. 2024 · Through ChIP seq, RNA seq, hormone and sugar measurements on 1 mm axillary bud tissue, we identify the genetic pathways putatively regulated by TB1. These … strong heart brand dog food

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An epigenetic basis of inbreeding depression in maize

WebOverlay of the RNA-Seq and ChIP-Seq results revealed 35 O2-modulated target genes. We identified four O2 binding motifs; among them, TGACGTGG appears to be the most … WebDownload scientific diagram Summary of P1 ChIP-Seq Results. from publication: A Genome-Wide Regulatory Framework Identifies Maize Pericarp Color1 Controlled Genes Pericarp Color1 (P1) encodes ... strong heart study calculatorWeb24 okt. 2024 · Genotyping platforms are important for genetic research and molecular breeding. In this study, a low-density genotyping platform containing 5.5K SNP markers … strong heart fitness ministry

"Weband include chromatin immunoprecipitation (ChIP)-based methods, such as microarray hybridization (ChIP-chip) and high-throughput sequencing (ChIP-seq). In contrast, gene-centered approaches are employed to determine which TFs control one or a set of genes, and yeast one-hybrid (Y1H) assays provide " - Maize chip-seq

Maize chip-seq

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Web10 mei 2024 · ATAC-seq与ChIP-seq calling出来的peak代表的意义是不同的: ChIP-seq 是用目的蛋白的抗体去拉蛋白，进而把目的蛋白结合的DNA片段也拉下来，然后把 DNA 片 … WebThis project generated ChIP-seq data for 104 Maize transcription factors, strongly expressed in the leaf tissue. ChIP-seq data and ATAC-seq data …

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WebThe Universal Plant ChIP-seq kit offers the convenience of extracting plant chromatin from a wide variety of plants including Arabidopsis, maize, rice, tomato and poplar. This … WebProduct Highlights. The MaizeSNP50 DNA Analysis Kit enables the interrogation of genetic variation across maize lines. Illumina developed this BeadChip array in collaboration with …

WebMaize chromatin states. About chromatin state: We collected 95 maize epigenomic datasets, including ChIP-seq, DNase-seq, ATAC-seq and DNA methylation data. A … Web30 mrt. 2015 · Maike Stam University of Amsterdam Celine Sabatel Abstract ChIP-seq is a powerful and innovative technique to study protein-DNA interaction in living organisms. …

Web6 mrt. 2024 · From the five maize TFs for which ChIP-seq data are available, only P1 and FEA4 were identified in our Y1H screens (Figure 6 B). In the Y1H assays, P1 recognized … Web22 feb. 2024 · By leveraging mRNA sequencing (RNA-seq) in kn1 loss-of-function mutant immature ears and tassels and SAMs with chromatin immunoprecipitation paired …

WebCistrome Analysis Pipeline. An integrative and reproducible bioinformatics data analysis platform based on Galaxy open source framework. Besides standard Galaxy functions, …

WebRNA-Seq revealed 1065 DEGs between wild-type and o2 endosperm, and ChIP-Seq identified 39 of these genes as pu- tative targets directly modulated by O2. Thirty-five of these genes were ... strong heart martial arts academyWebThis project generated ChIP-seq data for 104 Maize transcription factors, strongly expressed in the leaf tissue. ChIP-seq data and ATAC-seq data was used to train … strong heart beats symptomshttp://systemsbiology.cau.edu.cn/chromstates/Zm.php strong heart study websiteWeb14 aug. 2014 · H3K9me2 ChIP-seq. H3K9me2 profiling was performed on three replicates of B73 seedling using antibodies specific for H3K9me2 (#07-441) purchased from … strong heartbeat early pregnancyhttp://www.epigenome.cuhk.edu.hk/ strong heart study logoWeb11 jan. 2024 · While some progress toward the identification of maize TFBS motifs has been made through the use of sequence conservation analyses (Tian et al., 2024), this … strong heartbeat at restWebBesides standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Visit site » Cistrome Data Browser strong heartbeat nhs